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The NPR article appears to be a compilation of interviews (performed by the author and other media sources) with pertinent individuals (public health officials, economics experts) and research from agency reports (US Accountability Office, Institute for Justice and Democracy in Haiti). 

This article was meant to highlight the gaps in data available for violence against health care/aid workers in unsecured areas. As such, a large portion of the methods segment is dedicated to discussing the difficulties in locating this data and any patterns in data gaps. The primary method of collection, it appears, was through an initial search for peer-reviewed work that transformed into an accumulation of accounts from media, documentary, and editorial reports. It should be noted that some data is available from various organizations, regarding their specific statistics; however, this mainly tends to focus on larger incidents, such as kidnappings and deaths (as mentioned in the paper). There is also some information available through Aid Workers Security Database, but shortcomings in this area are also heavily noted.

Several leaders from various New York State agencies convened to outline plans for this policy. This included Governor Andrew M Cuomo, State Health Commissioner Dr. Howard Zucker, State Police Superintendent Joseph D'Amico, Port Authority Executive Director Pat Foye, and representatives from health care centers and agencies around the state.

The NYS Ebola Preparedness Plan was criticized by the public and other agencies, primarily for its strict quarantine protocols, which have been called "overzealous" by some. In addition, the policy was criticized for its inconsistency with Federal and international guidelines which may have created confusion for the public.

The article contains quotations attributed directly to the judge, so I would presume she was either present for the ruling or accessed the case brief. This would also be where Ms. Preston could obtain direct quotations from the plantiff's arguments. Additionally, the article includes statements from the EPA, public officials, and Senator Rodham Clinton; these would either be from official public releases or interviews by government personel. 

Dr. Emily Goldmann, PhD, MPH, is an Assistant Research Professor of Global Public Health at New York University's College of Global Public Health. She received her Master's and Doctorate's degrees in epidemiology from the University of Michigan. She has worked as an epidemiologist at the New York City Department of Health and Mental Hygiene in the Bureau of Adult Mental Health, where she conducted surveillance of psychological distress, serious mental illness, and psychiatric hospitalization among New Yorkers and assisted in designing and implementing a study of patients for psychiatric illness following Hurricane Sandy.

Dr. Sandro Galea, MD, MPH, DrPH, is a physician and epidemiologist. He is also the Robert A. Knox Professor and Dean at the Boston University School of Public Health. He has also previously held academic and leadership positions at the University of Michigan and at the New York Academy of Medicine. He has been involved in numerous research efforts and publications. His research focuses on the social production of health in urban populations, with a focus on brain disorders, mood-anxiety disorders, and substance abuse. He also maintains a strong interest in the consequences of mass trauma and conflict worldwide, including as a result of the 9/11 attacks, Hurricane Katrina, and the Iraq and Afghanistan wars.

One of the co-founders and current director, Dr. Josiah Rich, began the foundation after realizing the possibilities of treating patients with difficult, life-long diseases in a closed environment. After receiving a 5-year grant in 2002, and inspiration from a recurring patient named Charles Long, Rich began providing basic health care to prisoners in Rhode Island-- specifically focusing on addiction treatments. The foundation began when Dr. Rich and colleague Scott Allen, MD, turned results from this grant into a full-fledged advocacy center. They built on the long-standing tradition of Brown's Warren Alpert Medical School to work in Rhode Island correctional facilities; the inmate population provided an ample source for teaching young physicians, as well as large population well-suited for long-term research studies. While it began as an 5-year study into addiction and incarceration, the Center for Prisoner Health and Human Rights, based in Miriam, has substance abuse rehabilitation clinics, treats HIV/AIDs patients, and studies/treats lifelong infectious diseases such as tuberculosis. 

This research article was authored by Dr. Vincanne Adams, Dr. Diana English, and Taslim Van Hattum who are professors and researchers at the University of California at San Francisco's Department of Anthropology, History, and Social Medicine. All three authors have been extensively involved in research in their respective fields and have authored numerous publications.